Research outputs: Dr. Carlos Penedo

  1. Real-time observation of conformational switching in single conjugated polymer chains DOI
    Francisco Tenopala Carmona, Stephanie Fronk, Guillermo C. Bazan, Ifor David William Samuel and Juan Carlos Penedo-Esteiro, Science Advances, 4, 2 (2018)
  2. DNA binding and unwinding by Hel308 helicase requires dual functions of a winged helix domain DOI
    Sarah J Northall, Ryan Buckley, Nathan Jones, Juan Carlos Penedo-Esteiro, Panos Soultanas and Edward Bolt, DNA Repair, 57, p. 125-132 (2017)
  3. Transcriptional dynamics DOI
    Daniel A Lafontaine and Juan Carlos Penedo-Esteiro, Methods, 120, p. 1-2 (2017)
  4. An integrated perspective on RNA aptamer ligand-recognition models DOI
    K. McCluskey and J. Carlos Penedo, Physical Chemistry Chemical Physics, 19, 10 , p. 6921-6932 (2017)
  5. High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein DOI
    Michael John Morten, Roland Gamsjaeger, Liza Cubeddu, Ruvini Kariawasam, Jose Ramon Peregrina, Juan Carlos Penedo-Esteiro and Malcolm Frederick White, Extremophiles, 21, 2 , p. 369-379 (2017)
  6. Fluorescence-based strategies to investigate the structure and dynamics of aptamer-ligand complexes DOI
    Daniel Cibran Perez Gonzalez, Daniel A Lafontaine and Juan Carlos Penedo-Esteiro, Frontiers in Chemistry, 4 (2016)
  7. Morphology-specific inhibition of β-amyloid aggregates by 17β-hydroxysteroid dehydrogenase type 10 DOI
    Laura Aitken, Steven David Quinn, D. Cibran Perez-Gonzalez, Ifor David William Samuel, J. Carlos Penedo-Esteiro and Francis James Gunn-Moore, ChemBioChem, 17, 11 , p. 1029-1037 (2016)
  8. Biophysical approaches to gene regulation by riboswitches DOI
    Daniel Cibran Perez Gonzalez, Jonathan P Grondin, Daniel A Lafontaine, Juan Carlos Penedo-Esteiro and Mark C Leake (Editor), Biophysics of Infection, 915, p. 157-190 (2016)
  9. Mechanism of DNA loading by the DNA repair helicase XPD DOI
    Diana Constantinescu-Aruxandei, Biljana Petrovic-Stojanovska, Carlos Penedo, Malcolm F White and James H Naismith, Nucleic Acids Research, 44, 6 , p. 2806-2815 (2016)
  10. Binding dynamics of a monomeric SSB protein to DNA DOI
    Michael John Morten, Jose Ramon Peregrina, Maria Figueira-Gonzalez, Katrin Ackermann, Bela Ernest Bode, Malcolm F White and Carlos Penedo, Nucleic Acids Research, 43, 22 , p. 10907-10924 (2015)
  11. Functional studies of DNA-protein interactions using FRET techniques DOI
    Simon Blouin, Timothy David Craggs, Daniel A. Lafontaine and Carlos Penedo, Methods in Molecular Biology, 1334, p. 115-141 (2015)
  12. Single-molecule approaches for the characterization of riboswitch folding mechanisms
    Carlos Penedo, Julien Boudreault, Daniel Cibran Perez Gonzalez and Daniel A. Lafontaine, Methods in molecular biology (Clifton, N.J.), 1334, p. 101-107 (2015)
  13. RNA and DNA Diagnostics
    Daniel Cibran Perez Gonzalez, Carlos Penedo, Volker A. Erdmann (Editor), Stefan Jurga (Editor) and Jan Barciszewski (Editor), Single-Molecule Strategies for DNA and RNA Diagnostics, p. 297-332 (2015)
  14. Towards ratiometric sensing of amyloid fibrils in vitro DOI
    Sonia Freire, Flor Rodriguez-Prieto, M. Carmen Rios-Rodriguez, Carlos Penedo, Wajih Al-Soufi and Mercedes Novo, Chemistry - A European Journal, 21, 8 , p. 3425-3434 (2015)
  15. Fluorescence tools to investigate riboswitch structural dynamics
    Euan Stuart Shaw, Kaley McCluskey, Daniel A. Lafontaine and Carlos Penedo, Biochimica et Biophysica Acta - Gene regulatory mechanisms, 1839, 10 (2014)
  16. The phosphorylation of Hsp20 enhances its association with amyloid-β to increase protection against neuronal cell death DOI
    Ryan T Cameron, Steven D Quinn, Lynn S Cairns, Ruth MacLeod, Ifor D W Samuel, Brian O Smith, Carlos Penedo and George S Baillie, Molecular and Cellular Neuroscience, 61, p. 46-55 (2014)
  17. Single-molecule characterization of Fen1 and Fen1/PCNA complexes acting on flap substrates DOI
    Timothy David Craggs, Alfonso Brenlla, Richard David Hutton, Malcolm F White and Carlos Penedo, Nucleic Acids Research, 42, 3 , p. 1857-1872 (2014)
  18. Real-time probing of β-amyloid self-assembly and inhibition using fluorescence self-quenching between neighbouring dyes DOI
    Steven David Quinn, Paul Allan Dalgarno, Ryan T Cameron, Gordon James Hedley, Christian Hacker, John Milton Lucocq, Ifor David William Samuel and Carlos Penedo, Molecular BioSystems, 10, 1 , p. 34-44 (2014)
  19. Using sm-FRET and denaturants to reveal folding landscapes DOI
    Euan Stuart Shaw, Patrick St-Pierre, Kaley McCluskey, Daniel A Lafontaine and Carlos Penedo, Methods In Enzymology, 549, p. 313-341 (2014)
  20. Single-molecule chemical denaturation of riboswitches DOI
    Paul Allan Dalgarno, J Bordello, Rhodri Morris, P St-Pierre, A. Dubé, Ifor David William Samuel, Daniel Lafontaine and Carlos Penedo, Nucleic Acids Research, 41, 7 , p. 4253-4265 (2013)
  21. Single molecule Fluorescence of Nucleic Acids
    Kaley McCluskey, Euan Stuart Shaw, Daniel Lafontaine and Carlos Penedo, 1076 (2013)
  22. Solution-Based Single Molecule Imaging of Surface-Immobilized Conjugated Polymers DOI
    Paul Allan Dalgarno, Christopher A Traina, Carlos Penedo, Gui Bazan and Ifor David William Samuel, Journal of the American Chemical Society, 135, 19 (2013)
  23. Folding of the SAM-I riboswitch: A tale with a twist
    SH Eschbach, P St-Pierre, Carlos Penedo and DA Lafontaine, RNA Biology, 9, 2 (2012)
  24. Constitutive Regulatory Activity of an Evolutionarily Excluded Riboswitch Variant DOI
    Renaud Tremblay, Jean-Francois Lemay, Simon Blouin, Jerome Mulhbacher, Eric Bonneau, Pascale Legault, Paul Dupont, Carlos Penedo and Daniel A. Lafontaine, Journal of Biological Chemistry, 286, 31 , p. 27406-27415 (2011)
  25. Molecular insights into the ligand-controlled organization of SAM-I riboswitch DOI
    B Heppell, S Blouin, Anne Marie Dussault, J. Muhlbacher, J Ennifar, Carlos Penedo and D Lafontaine, Nature Chemical Biology, 7, 6 , p. 384-392 (2011)
  26. PCNA and XPF cooperate to distort DNA substrates DOI
    Richard David Hutton, Timothy David Craggs, Malcolm F White and Carlos Penedo, Nucleic Acids Research, 38, 5 , p. 1664-1675 (2010)
  27. Riboswitches: Ancient and Promising Genetic Regulators DOI
    Simon Blouin, Jerome Mulhbacher, Juan Carlos Penedo-Esteiro and Daniel A. Lafontaine, ChemBioChem, 10, 3 , p. 400-416 (2009)
  28. Application of fluorescence measurements for characterization of riboswitch-ligand interactions
    Juan Carlos Penedo-Esteiro, B Heppell, J Mulbacher and D Lafontaine, 540 (2009)
  29. Functional studies of DNA-protein interactions using FRET techniques
    Juan Carlos Penedo-Esteiro, S Blouin, D Lafontaine, T Moss (Editor) and B Leblanc (Editor), 543 (2009)
  30. Molecular basis of RNA-mediated gene regulation on the adenine riboswitch by single-molecule approaches
    Juan Carlos Penedo-Esteiro, JF Lemay, J Mulbacher, D Lafontaine and A Serganov (Editor), 540 (2009)
  31. PCNA stimulates catalysis by structure-specific nucleases using two distinct mechanisms DOI
    R D Hutton, J A Roberts, Carlos Penedo and Malcolm F White, Nucleic Acids Research, 36, 21 , p. 6720-6727 (2008)