Research outputs: Prof. Davide Marenduzzo

  1. Physical Principles of Retroviral Integration in the Human Genome DOI
    Davide Michieletto, Marina Lusic, Davide Marenduzzo and Enzo Orlandini, Nature Communications (2019)
  2. Rheology and microrheology of deformable droplet suspensions DOI
    M. Foglino, A. N. Morozov and D. Marenduzzo, Soft Matter, 14, 46 , p. 9361-9367 (2018)
  3. Polymer Simulations of Heteromorphic Chromatin Predict the 3D Folding of Complex Genomic Loci DOI
    Adam Buckle, Chris A. Brackley, Shelagh Boyle, Davide Marenduzzo and Nick Gilbert, Molecular Cell (2018)
  4. A growing bacterial colony in two dimensions as an active nematic DOI
    D Dell'Arciprete, M L Blow, A T Brown, F D C Farrell, J S Lintuvuori, A F McVey, D Marenduzzo and W C K Poon, Nature Communications, 9, 1 (2018)
  5. Mixtures of blue phase liquid crystal with simple liquids DOI
    J. S. Lintuvuori, K. Stratford, M. E. Cates and D. Marenduzzo, Physical Review Letters, 121, 3 (2018)
  6. Active Growth and Pattern Formation in Membrane-Protein Systems DOI
    F. Cagnetta, M. R. Evans and D. Marenduzzo, Physical Review Letters (2018)
  7. Hydrodynamic bifurcation in electro-osmotically driven periodic flows DOI
    Alexander Morozov, Davide Marenduzzo and Ronald G. Larson, Physical Review Fluids, 3, 6 (2018)
  8. HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types DOI
    Anne Zirkel, Milos Nikolic, Konstantinos Sofiadis, Jan-Philipp Mallm, Chris A. Brackley, Henrike Gothe, Oliver Drechsel, Christian Becker, Janine Altmueller, Natasa Josipovic et al., Molecular Cell, 70, 4 (2018)
  9. Kinetic theory of pattern formation in mixtures of microtubules and molecular motors DOI
    Ivan Maryshev, Davide Marenduzzo, Andrew B. Goryachev and Alexander Morozov, Physical Review E, 97, 2 (2018)
  10. Extrusion without a motor DOI
    C A Brackley, J Johnson, D Michieletto, A N Morozov, M Nicodemi, P R Cook and D Marenduzzo, Nucleus (Austin, Tex.), p. 1-10 (2018)
  11. Shaping Epigenetic Memory via Genomic Bookmarking DOI
    Davide Michieletto, Michael Chiang, Davide Coli, Argyris Papantonis, Enzo Orlandini, Peter R. Cook and Davide Marenduzzo, Nucleic Acids Research, 46, 1 , p. 83-93 (2017)
  12. Flow of Deformable Droplets DOI
    M. Foglino, A. N. Morozov, O. Henrich and D. Marenduzzo, Physical Review Letters, 119, 20 (2017)
  13. Epigenetic Transitions and Knotted Solitons in Stretched Chromatin DOI
    Davide Michieletto, Enzo Orlandini and Davide Marenduzzo, Scientific Reports (2017)
  14. Nonequilibrium Chromosome Looping via Molecular Slip Links DOI
    C. A. Brackley, J. Johnson, D. Michieletto, A. N. Morozov, M. Nicodemi, P. R. Cook and D. Marenduzzo, Physical Review Letters, 119, 13 (2017)
  15. Dynamical Scaling and Phase Coexistence in Topologically-Constrained DNA Melting DOI
    Y. A. G. Fosado, D. Michieletto and D. Marenduzzo, Physical Review Letters, 119 (2017)
  16. Ring Polymers: Threadings, Knot Electrophoresis and Topological Glasses DOI
    Davide Michieletto, Enzo Orlandini, Davide Marenduzzo and Matthew S. Turner, Polymers, 9, 8 (2017)
  17. Anchoring-driven spontaneous rotations in active gel droplets DOI
    Ana Azevedo da luz fialho, M. L. Blow and D. Marenduzzo, Soft Matter, 13, 35 , p. 5933-5941 (2017)
  18. Role of Correlations in the Collective Behavior of Microswimmer Suspensions DOI
    Joakim Stenhammar, Cesare Nardini, Rupert W. Nash, Davide Marenduzzo and Alexander Morozov, Physical Review Letters, 119, 2 (2017)
  19. Colloidal spherocylinders at an interface: Flipper dynamics and bilayer formation
    Davide Marenduzzo, Paul Clegg, Giovanni B. Brandani and Tao Li, Physical Review Letters, 119, 1 (2017)
  20. Phoretic Interactions Generically Induce Dynamic Clusters and Wave Patterns in Active Colloids DOI
    Benno Liebchen, Davide Marenduzzo and Michael E. Cates, Physical Review Letters, 118, 26 (2017)
  21. Contractile and chiral activities codetermine the helicity of swimming droplet trajectories DOI
    Elsen Tjhung, Michael E. Cates and Davide Marenduzzo, Proceedings of the National Academy of Sciences, 114, 18 , p. 4631-4636 (2017)
  22. Ephemeral Protein Binding to DNA Shapes Stable Nuclear Bodies and Chromatin Domains
    Chris Brackley, Benno Liebchen, Davide Michieletto, Francois Mouvet, Peter Cook and Davide Marenduzzo, Biophysical Journal, 112, 6 (2017)
  23. Genome organization: experiments and modeling DOI
    Nick Gilbert and Davide Marenduzzo, Chromosome Research, 25, 1 , p. 1-4 (2017)
  24. Exploiting native forces to capture chromosome conformation in mammalian cell nuclei DOI
    Lilija Brant, Theodore Georgomanolis, Milos Nikolic, Chris A Brackley, Petros Kolovos, Wilfred van Ijcken, Frank G Grosveld, Davide Marenduzzo and Argyris Papantonis, Molecular Systems Biology, 12, 12 , p. 891 (2016)
  25. Polymer model with Epigenetic Recoloring Reveals a Pathway for the de novo Establishment and 3D Organization of Chromatin Domains DOI
    D. Michieletto, E. Orlandini and D. Marenduzzo, Physical Review X, 6, 4 (2016)
  26. Simulating topological domains in human chromosomes with a fitting-free model DOI
    C A Brackley, D Michieletto, F Mouvet, J Johnson, S Kelly, P. R. Cook and D Marenduzzo, Nucleus (Austin, Tex.), 7, 5 , p. 453-461 (2016)
  27. A Single Nucleotide Resolution Model for Large-Scale Simulations of Double Stranded DNA DOI
    Y. A. G. Fosado, D. Michieletto, J. Allan, C. Brackley, O. Henrich and D. Marenduzzo, Soft Matter, 12, 47 , p. 9458-9470 (2016)
  28. Hydrodynamic oscillations and variable swimming speed in squirmers close to repulsive walls
    Juho Lintuvuori, Aidan Brown, Kevin Stratford and Davide Marenduzzo, Soft Matter, Advance Article (2016)
  29. Pattern formation in chemically interacting active rotors with self-propulsion DOI
    Benno Liebchen, Michael E. Cates and Davide Marenduzzo, Soft Matter, 12, 35 , p. 7259-7264 (2016)
  30. Stochastic Model of Supercoiling-Dependent Transcription DOI
    C. A. Brackley, J. Johnson, A. Bentivoglio, S. Corless, N. Gilbert, G. Gonnella and D. Marenduzzo, Physical Review Letters, 117, 1 (2016)
  31. Simulated binding of transcription factors to active and inactive regions folds human chromosomes into loops, rosettes and topological domains DOI
    Chris A Brackley, James Johnson, Steven Kelly, Peter R Cook and Davide Marenduzzo, Nucleic Acids Research (2016)
  32. Light-induced self-assembly of active rectification devices DOI
    J. Stenhammar, R. Wittkowski, D. Marenduzzo and M. E. Cates, Science Advances, 2, 4 (2016)
  33. Predicting the three-dimensional folding of cis-regulatory regions in mammalian genomes using bioinformatic data and polymer models DOI
    Chris A Brackley, Jill M Brown, Dominic Waithe, Christian Babbs, James Davies, Jim R Hughes, Veronica J Buckle and Davide Marenduzzo, Genome Biology, 17, 1 (2016)
  34. Curvature-driven positioning of Turing patterns in phase-separating curved membranes DOI
    Andrew Goryachev, Giulio Vandin, Davide Marenduzzo and Enzo Orlandini, Soft Matter (2016)
  35. A one-dimensional statistical mechanics model for nucleosome positioning on genomic DNA DOI
    S Tesoro, I Ali, A N Morozov, N Sulaiman and D Marenduzzo, Physical Biology, 13, 1 (2016)
  36. Spontaneous flow in polar active fluids: the effect of a phenomenological self propulsion-like term DOI
    Francesco Bonelli, Giuseppe Gonnella, Adriano Tiribocchi and Davide Marenduzzo, European physical journal e, 39, 1 , p. 1-10 (2016)
  37. Clustering and Pattern Formation in Chemorepulsive Active Colloids DOI
    Benno Liebchen, Davide Marenduzzo, Ignacio Pagonabarraga and Michael E. Cates, Physical Review Letters, 115, 25 (2015)
  38. Active Model H DOI
    Adriano Tiribocchi, Raphael Wittkowski, Davide Marenduzzo and Michael E. Cates, Physical Review Letters, 115, 18 (2015)
  39. The Bacterial Hydrophobin BslA is a Switchable Ellipsoidal Janus Nanocolloid DOI
    Giovanni B Brandani, Marieke Schor, Ryan Morris, Nicola Stanley-Wall, Cait E MacPhee, Davide Marenduzzo and Ulrich Zachariae, Langmuir, 31, 42 , p. 11558-11563 (2015)
  40. Topological patterns in two-dimensional gel electrophoresis of DNA knots DOI
    Davide Michieletto, Davide Marenduzzo and Enzo Orlandini, Proceedings of the National Academy of Sciences, 112, 40 (2015)
  41. Is the kinetoplast DNA a percolating network of linked rings at its critical point? DOI
    Davide Michieletto, Davide Marenduzzo and Enzo Orlandini, Physical Biology, 12, 3 (2015)
  42. Electric Field Controlled Columnar and Planar Patterning of Cholesteric Colloids DOI
    G. D'Adamo, D. Marenduzzo, C. Micheletti and E. Orlandini, Physical Review Letters, 114, 17 (2015)
  43. Interfacial self-assembly of a bacterial hydrophobin DOI
    Keith Bromley, Ryan Morris, Laura Hobley, Giovanni Brandani, Rachel M. C. Gillespie, Matthew McCluskey, Ulrich Zachariae, Davide Marenduzzo, Nicola R. Stanley-Wall and Cait. E. MacPhee, Proceedings of the National Academy of Sciences, 112, 17 , p. 5419-5424 (2015)
  44. Motility-induced phase separation and coarsening in active matter DOI
    Giuseppe Gonnella, Davide Marenduzzo, Antonio Suma and Adriano Tiribocchi, Comptes rendus physique, 16, 3 , p. 316-331 (2015)
  45. Self-assembling knots of controlled topology by designing the geometry of patchy templates DOI
    Guido Polles, Davide Marenduzzo, Enzo Orlandini and Cristian Micheletti, Nature Communications, 6 (2015)
  46. A simple model for DNA bridging proteins and bacterial or human genomes DOI
    J. Johnson, Chris Brackley, P. R. Cook and D. Marenduzzo, Journal of Physics: Condensed Matter, 27, 6 (2015)
  47. A minimal physical model captures the shapes of crawling cells DOI
    E. Tjhung, A. Tiribocchi, D. Marenduzzo and M. E. Cates, Nature Communications, 6 (2015)
  48. An introduction to the physics of active matter DOI
    G. De Magistris and D. Marenduzzo, Physica a-Statistical mechanics and its applications, 418, p. 65-77 (2015)
  49. Activity-Induced Phase Separation and Self-Assembly in Mixtures of Active and Passive Particles DOI
    Joakim Stenhammar, Raphael Wittkowski, Davide Marenduzzo and Michael E. Cates, Physical Review Letters, 114, 1 (2015)
  50. Filling an Emulsion Drop with Motile Bacteria DOI
    I. D. Vladescu, E. J. Marsden, J. Schwarz-Linek, V. A. Martinez, J. Arlt, A. N. Morozov, D. Marenduzzo, M. E. Cates and W. C. K. Poon, Physical Review Letters, 113, 26 (2014)
  51. Motility-induced phase separation in an active dumbbell fluid DOI
    A. Suma, G. Gonnella, D. Marenduzzo and E. Orlandini, Europhysics Letters, 108, 5 (2014)
  52. Topological constraints strongly affect chromatin reconstitution in silico DOI
    C. A. Brackley, James Allan, David Keszenman Pereyra and D. Marenduzzo, Nucleic Acids Research, 43, 1 , p. 63-73 (2014)
  53. Activity-induced clustering in model dumbbell swimmers DOI
    Akira Furukawa, Davide Marenduzzo and Michael E. Cates, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 90, 2 (2014)
  54. Scalar phi(4) field theory for active-particle phase separation DOI
    Raphael Wittkowski, Adriano Tiribocchi, Joakim Stenhammar, Rosalind J. Allen, Davide Marenduzzo and Michael E. Cates, Nature Communications, 5 (2014)
  55. Self-assembly of colloid-cholesteric composites provides a possible route to switchable optical materials DOI
    Kevin Stratford, Michael Cates, Oliver Henrich, Juho Lintuvuori and Davide Marenduzzo, Nature Communications, 5 (2014)
  56. Switching hydrodynamics in liquid crystal devices: a simulation perspective DOI
    Oliver Henrich, Davide Marenduzzo and Juho Lintuvuori, Soft Matter, 10, 26 , p. 4580-4592 (2014)
  57. Models for twistable elastic polymers in Brownian dynamics, and their implementation for LAMMPS DOI
    Chris Brackley, A. N. Morozov and D. Marenduzzo, The Journal of Chemical Physics, 140, 13 (2014)
  58. Threading Dynamics of Ring Polymers in a Gel DOI
    Davide Michieletto, Davide Marenduzzo, Enzo Orlandini, Gareth P. Alexander and Matthew S. Turner, ACS MACRO LETTERS, 3, 3 , p. 255-259 (2014)
  59. Active polar fluid flow in finite droplets DOI
    Carl A. Whitfield, Davide Marenduzzo, Raphaƫl Voituriez and Rhoda J. Hawkins, European physical journal e, 37, 2 (2014)
  60. Modelling the effect of myosin X motors on filopodia growth DOI
    M. R. Evans, A. B. Goryachev and D. Marenduzzo, Physical Biology, 11, 1 (2014)
  61. Spiral and never-settling patterns in active systems DOI
    X. Yang, D. Marenduzzo and M. C. Marchetti, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 89, 1 (2014)
  62. Chemotactic clusters in confined run-and-tumble bacteria DOI
    E. J. Marsden, C. Valeriani, I. Sullivan, M. E. Cates and D. Marenduzzo, Soft Matter, 10, 1 , p. 157-165 (2014)
  63. Dynamics of self-threading ring polymers in a gel DOI
    Davide Michieletto, Davide Marenduzzo, Enzo Orlandini, Gareth P. Alexander and Matthew S. Turner, Soft Matter, 10, 32 , p. 5936-5944 (2014)
  64. Enhanced diffusion of tracer particles in dilute bacterial suspensions DOI
    Alexander Morozov and Davide Marenduzzo, Soft Matter, 10, 16 , p. 2748-2758 (2014)
  65. Phase behaviour of active Brownian particles DOI
    Joakim Stenhammar, Davide Marenduzzo, Rosalind J. Allen and Michael E. Cates, Soft Matter, 10, 10 , p. 1489-1499 (2014)
  66. Spontaneous motility of passive emulsion droplets in polar active gels DOI
    G. De Magistris, A. Tiribocchi, C. A. Whitfield, R. J. Hawkins, M. E. Cates and D. Marenduzzo, Soft Matter, 10, 39 , p. 7826-7837 (2014)
  67. The dynamics of colloidal intrusions in liquid crystals DOI
    G. Foffano, J. S. Lintuvuori, A. Tiribocchi and D. Marenduzzo, Liquid crystals reviews, 2, 1 , p. 1-27 (2014)
  68. Topological friction strongly affects viral DNA ejection DOI
    D. Marenduzzo, C. Micheletti, E. Orlandini and D. W. Sumners, Proceedings of the National Academy of Sciences, 110, 50 , p. 20081-20086 (2013)
  69. Rheology of cubic blue phases DOI
    Oliver Henrich, Kevin Stratford, Peter V. Coveney, Michael Cates and Davide Marenduzzo, Soft Matter, 9, p. 10243 (2013)
  70. Chemotactic Sensing towards Ambient and Secreted Attractant Drives Collective Behaviour of E. coli DOI
    Tine Curk, Davide Marenduzzo and Jure Dobnikar, PLoS One, 8, 10 (2013)
  71. Continuum Theory of Phase Separation Kinetics for Active Brownian Particles DOI
    Joakim Stenhammar, Adriano Tiribocchi, Rosalind J. Allen, Davide Marenduzzo and Michael E. Cates, Physical Review Letters, 111, 14 (2013)
  72. Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization DOI
    Chris Brackley, Stephen Taylor, Argyris Papantonis, Peter R Cook and Davide Marenduzzo, Proceedings of the National Academy of Sciences, 110, 38 (2013)
  73. Intracellular Facilitated Diffusion DOI
    Chris Brackley, M. E. Cates and D. Marenduzzo, Physical Review Letters, 111, 10 (2013)
  74. Quantifying Disorder through Conditional Entropy DOI
    Giovanni B. Brandani, Marieke Schor, Cait E. MacPhee, Helmut Grubmueller, Ulrich Zachariae and Davide Marenduzzo, PLoS One, 8, 6 (2013)
  75. Colloidal Templating at a Cholesteric-Oil Interface: Assembly Guided by an Array of Disclination Lines DOI
    J. S. Lintuvuori, Anne Pawsey, K. Stratford, M. E. Cates, P. S. Clegg and D. Marenduzzo, Physical Review Letters, 110, 18 (2013)
  76. Effect of DNA conformation on facilitated diffusion DOI
    Chris Brackley, Michael Cates and Davide Marenduzzo, Biochemical Society Transactions, 41, p. 582-588 (2013)
  77. The knotted strands of life
    Davide Marenduzzo, Cristian Micheletti and Enzo Orlandini, Physics world, 26, 4 , p. 30-34 (2013)
  78. Mechanically driven growth of quasi-two dimensional microbial colonies DOI
    F. D. C. Farrell, O. Hallatschek, D. Marenduzzo and B. Waclaw, Physical Review Letters, 111 (2013)
  79. Sedimentation of knotted polymers DOI
    J. Piili, D. Marenduzzo, K. Kaski and R. P. Linna, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 87, 1 (2013)
  80. Domain formation on curved membranes DOI
    E. Orlandini, D. Marenduzzo and A. B. Goryachev, Soft Matter, 9, 39 , p. 9311-9318 (2013)
  81. Flexoelectric switching in cholesteric blue phases DOI
    A. Tiribocchi, M. E. Cates, G. Gonnella, D. Marenduzzo and E. Orlandini, Soft Matter, 9, 19 , p. 4831-4842 (2013)
  82. Phase separation dynamics on curved surfaces DOI
    Davide Marenduzzo and Enzo Orlandini, Soft Matter, 9, 4 , p. 1178-1187 (2013)
  83. Space exploration by the promoter of a long human gene during one transcription cycle DOI
    Joshua D Larkin, Argyris Papantonis, Peter R Cook and Davide Marenduzzo, Nucleic Acids Research, 41, 4 , p. 2216-2227 (2013)
  84. Facilitated Diffusion on Mobile DNA DOI
    Chris Brackley, M. E. Cates and D. Marenduzzo, Physical Review Letters, 109, 16 (2012)
  85. Bulk rheology and microrheology of active fluids DOI
    G. Foffano, J.S. Lintuvuori, A.N. Morozov, M.E. Cates, D. Marenduzzo and K. Stratford, European physical journal e, 35, 10 (2012)
  86. Equilibrium and dynamical behavior in the Vicsek model for self-propelled particles under shear DOI
    Gustavo P. Saracco, Giuseppe Gonnella, Davide Marenduzzo and Enzo Orlandini, Central european journal of physics, 10, 5 , p. 1109-1115 (2012)
  87. Colloidal particles at the interface between an isotropic liquid and a chiral liquid crystal DOI
    Anne Pawsey, Juho Lintuvuori, Tiffany Wood, Job Thijssen, Davide Marenduzzo and Paul Clegg, Soft Matter, 8, 32 , p. 8422-8428 (2012)
  88. Spontaneous symmetry breaking in active droplets provides a generic route to motility DOI
    E. Tjhung, D. Marenduzzo and M.E. Cates, Proceedings of the National Academy of Sciences, 109, 31 , p. 12381-12386 (2012)
  89. Confined cubic blue phases under shear DOI
    Oliver Henrich, K. Stratford, D. Marenduzzo, P. V. Coveney and M. E. Cates, Journal of Physics: Condensed Matter, 24, 28 (2012)
  90. Colloids in Active Fluids DOI
    G. Foffano, J. S. Lintuvuori, K. Stratford, M. E. Cates and D. Marenduzzo, Physical Review Letters, 109, 2 (2012)
  91. Pattern Formation in Self-Propelled Particles with Density-Dependent Motility DOI
    F. D. C. Farrell, M. C. Marchetti, D. Marenduzzo and J. Tailleur, Physical Review Letters, 108, 24 (2012)
  92. Cytoplasmic streaming in plant cells DOI
    K. Wolff, D. Marenduzzo and M. E. Cates, Journal of the Royal Society Interface, 9, 71 , p. 1398-1408 (2012)
  93. Phase separation and rotor self-assembly in active particle suspensions DOI
    J. Schwarz-Linek, C. Valeriani, A. Cacciuto, M. E. Cates, D. Marenduzzo, A. N. Morozov and W. C. K. Poon, Proceedings of the National Academy of Sciences, 109, 11 , p. 4052-4057 (2012)
  94. Facilitated diffusion on confined DNA DOI
    G. Foffano, D. Marenduzzo and E. Orlandini, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 85, 2 (2012)
  95. Rheology of lamellar liquid crystals in two and three dimensions: a simulation study DOI
    Oliver Henrich, K. Stratford, D. Marenduzzo, P. V. Coveney and M. E. Cates, Soft Matter, 8, 14 , p. 3817-3831 (2012)
  96. Self-Assembly and Nonlinear Dynamics of Dimeric Colloidal Rotors in Cholesterics DOI
    J. S. Lintuvuori, K. Stratford, Michael Cates and D. Marenduzzo, Physical Review Letters, 107, 26 (2011)
  97. Bistable Defect Structures In Blue Phase Devices DOI
    A. Tiribocchi, G. Gonnella, D. Marenduzzo, E. Orlandini and F. Salvadore, Physical Review Letters, 107, 23 (2011)
  98. Lateral dynamics of charged lipids and peripheral proteins in spatially heterogeneous membranes: Comparison of continuous and Monte Carlo approaches DOI
    Vladimir Yu Kiselev, Marcin Leda, Alexey I. Lobanov, Davide Marenduzzo and Andrew B. Goryachev, The Journal of Chemical Physics, 135, 15 (2011)
  99. A Self-Quenched Defect Glass in a Colloid-Nematic Liquid Crystal Composite DOI
    Tiffany Wood, Juho Lintuvuori, Andrew B Schofield, D. Marenduzzo and Wilson Poon, Science, 334, 6052 , p. 79-83 (2011)
  100. Shearing self-propelled suspensions: Arrest of coarsening and suppression of giant density fluctuations DOI
    G. P. Saracco, G. Gonnella, D. Marenduzzo and E. Orlandini, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 84, 3 (2011)
  101. Monte Carlo and event-driven dynamics of Brownian particles with orientational degrees of freedom DOI
    Flavio Romano, Cristiano De Michele, Davide Marenduzzo and Eduardo Sanz, The Journal of Chemical Physics, 135, 12 (2011)
  102. Influence of ions on genome packaging and ejection: A molecular dynamics study DOI
    I. Ali and D. Marenduzzo, The Journal of Chemical Physics, 135, 9 (2011)
  103. Polymers with spatial or topological constraints: Theoretical and computational results DOI
    Cristian Micheletti, Davide Marenduzzo and Enzo Orlandini, Physics Reports, 504, 1 , p. 173 (2011)
  104. Colloids in a bacterial bath: simulations and experiments DOI
    Chantal Valeriani, Martin Li, John Novosel, Jochen Arlt and Davide Marenduzzo, Soft Matter, 7, 11 , p. 5228-5238 (2011)
  105. Nonlinear dynamics and rheology of active fluids: Simulations in two dimensions DOI
    S. M. Fielding, D. Marenduzzo and M. E. Cates, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 83, 4 (2011)
  106. Structure of Blue Phase III of Cholesteric Liquid Crystals DOI
    Oliver Henrich, K. Stratford, Michael Cates and D. Marenduzzo, Physical Review Letters, 106, 10 (2011)
  107. Lateral Dynamics of Proteins with Polybasic Domain on Anionic Membranes DOI
    Vladimir Yu. Kiselev, Davide Marenduzzo and Andrew B. Goryachev, Biophysical Journal, 100, 5 , p. 1261-1270 (2011)
  108. Defect hydrodynamics in 2D polar active fluids DOI
    J. Elgeti, M. E. Cates and D. Marenduzzo, Soft Matter, 7, 7 , p. 3177-3185 (2011)
  109. Non-specific (entropic) forces as major determinants of the structure of mammalian chromosomes DOI
    Kieran Finan, Peter R. Cook and Davide Marenduzzo, Chromosome Research, 19, 1 , p. 53-61 (2011)
  110. Nonequilibrium steady states in polar active fluids DOI
    Elsen Tjhung, Michael E. Cates and Davide Marenduzzo, Soft Matter, 7, 16 , p. 7453-7464 (2011)
  111. Switching dynamics in cholesteric blue phases DOI
    A. Tiribocchi, G. Gonnella, D. Marenduzzo and E. Orlandini, Soft Matter, 7, 7 , p. 3295-3306 (2011)
  112. Colloids in Cholesterics: Size-Dependent Defects and Non-Stokesian Microrheology DOI
    J. S. Lintuvuori, K. Stratford, M. E. Cates and D. Marenduzzo, Physical Review Letters, 105, 17 (2010)
  113. Switching and defect dynamics in multistable liquid crystal devices DOI
    A. Tiribocchi, G. Gonnella, D. Marenduzzo and E. Orlandini, Applied Physics Letters, 97, 14 (2010)
  114. Ordering dynamics of blue phases entails kinetic stabilization of amorphous networks DOI
    Oliver Henrich, Kevin Stratford, Davide Marenduzzo and Michael E. Cates, Proceedings of the National Academy of Sciences, 107, 30 , p. 13212-13215 (2010)
  115. Biopolymer organization upon confinement DOI
    D. Marenduzzo, C. Micheletti and E. Orlandini, Journal of Physics: Condensed Matter, 22, 28 (2010)
  116. Arrested phase separation in reproducing bacteria creates a generic route to pattern formation DOI
    M. E. Cates, D. Marenduzzo, I. Pagonabarraga and J. Tailleur, Proceedings of the National Academy of Sciences, 107, 26 , p. 11715-11720 (2010)
  117. Non-equilibrium dynamics of an active colloidal "chucker" DOI
    C. Valeriani, Rosalind Allen and D. Marenduzzo, The Journal of Chemical Physics, 132, 20 (2010)
  118. Dynamic Monte Carlo versus Brownian dynamics: A comparison for self-diffusion and crystallization in colloidal fluids DOI
    E. Sanz and D. Marenduzzo, The Journal of Chemical Physics, 132, 19 (2010)
  119. Different pulling modes in DNA overstretching: A theoretical analysis DOI
    D. Marenduzzo, E. Orlandini, F. Seno and A. Trovato, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 81, 5 (2010)
  120. Domain growth in cholesteric blue phases: Hybrid lattice Boltzmann simulations DOI
    Oliver Henrich, D. Marenduzzo, K. Stratford and M. E. Cates, Computers & mathematics with applications, 59, 7 , p. 2360-2369 (2010)
  121. The role of noise and advection in absorbing state phase transitions DOI
    C. Barrett-Freeman, M. R. Evans, D. Marenduzzo and J. Tailleur, Europhysics Letters, 90, 1 (2010)
  122. Thermodynamics of blue phases in electric fields DOI
    Oliver Henrich, D. Marenduzzo, K. Stratford and M. E. Cates, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 81, 3 (2010)
  123. Colloids in liquid crystals: a lattice Boltzmann study DOI
    J .S. Lintuvuori, D. Marenduzzo, K. Stratford and M. E. Cates, Journal of Materials Chemistry, 20, 46 , p. 10547-10552 (2010)
  124. Hydrodynamics of non-homogeneous active gels DOI
    D. Marenduzzo and E. Orlandini, Soft Matter, 6, 4 , p. 774-778 (2010)
  125. DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting DOI
    Davide Marenduzzo, Enzo Orlandini, Andrzej Stasiak, De Witt Sumners, Luca Tubiana and Cristian Micheletti, Proceedings of the National Academy of Sciences, 106, 52 , p. 22269-22274 (2009)
  126. Entropic organization of interphase chromosomes DOI
    Peter R. Cook and Davide Marenduzzo, The Journal of Cell Biology, 186, 6 , p. 825-834 (2009)
  127. Topological and entropic repulsion in biopolymers DOI
    D. Marenduzzo and E. Orlandini, Journal of Statistical Mechanics: Theory and Experiment (2009)
  128. Localisation of DivIVA by targeting to negatively curved membranes DOI
    Rok Lenarcic, Sven Halbedel, Loek Visser, Michael Shaw, Ling Juan Wu, Jeff Errington, Davide Marenduzzo and Leendert W. Hamoen, EMBO Journal, 28, 15 , p. 2272-2282 (2009)
  129. Phase diagrams for DNA denaturation under stretching forces DOI
    D. Marenduzzo, A. Maritan, E. Orlandini, F. Seno and A. Trovato, Journal of Statistical Mechanics: Theory and Experiment (2009)
  130. Statistics of confined polymers and the melting of a DNA spool DOI
    D. Marenduzzo, Europhysics Letters, 85, 3 (2009)
  131. Lattice Boltzmann simulations of liquid crystalline fluids: active gels and blue phases DOI
    M. E. Cates, Oliver Henrich, D. Marenduzzo and K. Stratford, Soft Matter, 5, 20 , p. 3791-3800 (2009)
  132. Simulations of knotting in confined circular DNA DOI
    C. Micheletti, D. Marenduzzo, E. Orlandini and D. W. Sumners, Biophysical Journal, 95, 8 , p. 3591-3599 (2008)
  133. Nonequilibrium phase transition in the sedimentation of reproducing particles DOI
    C. Barrett-Freeman, Martin R. Evans, D. Marenduzzo and Wilson Poon, Physical Review Letters, 101, 10 (2008)
  134. Shearing active gels close to the isotropic-nematic transition DOI
    Michael Cates, S. M. Fielding, D. Marenduzzo, E. Orlandini and J. M. Yeomans, Physical Review Letters, 101, 6 (2008)
  135. Ejection dynamics of polymeric chains from viral capsids: Effect of solvent quality DOI
    I. Ali, D. Marenduzzo and J. M. Yeomans, Biophysical Journal, 94, 11 , p. 4159-4164 (2008)
  136. Cubic blue phases in electric fields DOI
    G. P. Alexander and D. Marenduzzo, Europhysics Letters, 81, 6 (2008)
  137. Lattice Boltzmann simulations of spontaneous flow in active liquid crystals: The role of boundary conditions DOI
    D. Marenduzzo, E. Orlandini, M. E. Cates and J. M. Yeomans, Journal of non-Newtonian fluid mechanics, 149, 1-3 , p. 56-62 (2008)
  138. Computer simulations of DNA packing inside bacteriophages: Elasticity, electrostatics and entropy DOI
    D. Marenduzzo, Computational and mathematical methods in medicine, 9, 3-4 , p. 317-325 (2008)
  139. Hydrodynamic of Active Liquid Crystals: A Hybrid Lattice Boltzmann Approach DOI
    E. Orlandini, M. E. Cates, D. Marenduzzo, L. Tubiana and J. M. Yeomans, Molecular Crystals and Liquid Crystals Science and Technology - Section A: Molecular Crystals and Liquid Crystals, 494, p. 293-308 (2008)
  140. Steady-state hydrodynamic instabilities of active liquid crystals: Hybrid lattice Boltzmann simulations DOI
    D. Marenduzzo, E. Orlandini, M. E. Cates and J. M. Yeomans, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 76, 3 (2007)