Research outputs: Prof. Rosalind Allen

  1. Trajectory reweighting for non-equilibrium steady states DOI
    Patrick B. Warren and Rosalind J. Allen, Molecular Physics, 116, 21-22 , p. 3104-3113 (2018)
  2. Bacterial growth: a statistical physicist's guide DOI
    Rosalind Allen and Bartlomiej Waclaw, Reports on Progress in Physics, 82, 1 (2018)
  3. Predicting the dynamics of bacterial growth inhibition by ribosome-targeting antibiotics DOI
    Philip Greulich, Jakub Dolezal, Matthew Scott, Martin R. Evans and Rosalind J. Allen, Physical Biology, 14, 6 (2017)
  4. Oxic-anoxic regime shifts mediated by feedbacks between biogeochemical processes and microbial community dynamics DOI
    Timothy Bush, Muhe Diao, Rosalind J. Allen, Ruben Sinnige, Gerard Muyzer and Jef Huisman, Nature Communications, 8 (2017)
  5. The Pseudomonas aeruginosa PSL Polysaccharide Is a Social but Noncheatable Trait in Biofilms
    Rosalind Allen, Yasuhiko Irie, Aled Roberts, Kasper Kragh, Vernita Gordon, Jaime Hutchison, Gavin Melaugh, Thomas Bjarnsholt, Stuart West and Stephen Diggle, mBio (2017)
  6. Assembly of Microbial Communities in Replicate Nutrient-Cycling Model Ecosystems Follows Divergent Trajectories, Leading to Alternate Stable States DOI
    Eulyn Pagaling, Kristin Vassileva, Catherine Mills, Timothy Bush, Richard Blythe, Jana Schwarz-Linek, Fiona Strathdee, Rosalind Allen and Andrew Free, Environmental Microbiology, 19, p. 3374-3386 (2017)
  7. Antibiotic resistance: a physicist’s view DOI
    Rosalind Allen and Bartlomiej Waclaw, Physical Biology, 13, 4 , p. 045001 (2016)
  8. Role of Multicellular Aggregates in Biofilm Formation DOI
    Kasper N Kragh, Jaime B Hutchison, Gavin Melaugh, Chris Rodesney, Aled E L Roberts, Yasuhiko Irie, Peter Ø Jensen, Stephen P Diggle, Rosalind J Allen, Vernita Gordon et al., mBio, 7, 2 (2016)
  9. Shaping the growth behaviour of biofilms initiated from bacterial aggregates DOI
    Gavin Melaugh, Jaime Hutchison, Kasper Nørskov Kragh, Yasuhiko Irie, Aled Roberts, Thomas Bjarnsholt, Stephen P. Diggle, Vernita D. Gordon and Rosalind J. Allen, PLoS One, 11, 3 (2016)
  10. Challenges in microbial ecology: building predictive understanding of community function and dynamics DOI
    Stefanie Widder, Rosalind J. Allen, Thomas Pfeiffer, Thomas P. Curtis, Carsten Wiuf, William T. Sloan, Otto X. Cordero, Sam P. Brown, Babak Momeni, Wenying Shou et al., The ISME Journal, 10, p. 2557-2568 (2016)
  11. Lower glycolysis carries a higher flux than any biochemically possible alternative DOI
    Steven J. Court, Bartlomiej Waclaw and Rosalind J. Allen, Nature Communications, 6 (2015)
  12. Competition for space during bacterial colonization of a surface DOI
    Diarmuid P. Lloyd and Rosalind J. Allen, Journal of the Royal Society Interface, 12, 110 (2015)
  13. Redox regime shifts in microbially mediated biogeochemical cycles DOI
    T. Bush, I. B. Butler, A. Free and R. J. Allen, Biogeosciences, 12, 12 , p. 3713-3724 (2015)
  14. A Kinetic Study of Ovalbumin Fibril Formation DOI
    Jason M. D. Kalapothakis, Ryan Morris, Juraj Szavits-Nossan, Kym Eden, Sam Covill, Sean Tabor, Jay Gillam, Perdita E. Barran, Rosalind J. Allen and Cait E. MacPhee, Biophysical Journal, 108, 9 , p. 2300-2311 (2015)
  15. Growth-dependent bacterial susceptibility to ribosome-targeting antibiotics DOI
    Philip Greulich, Matthew Scott, Martin R. Evans and Rosalind J. Allen, Molecular Systems Biology, 11, 3 (2015)
  16. Redox regime shifts in microbially-mediated biogeochemical cycles DOI
    T. Bush, I. B. Butler, A. Free and R. J. Allen, Biogeosciences Discussions, 12, 4 , p. 3283-3314 (2015)
  17. Competition between Primary Nucleation and Autocatalysis in Amyloid Fibril Self-Assembly DOI
    Kym Eden, Ryan Morris, Jay Gillam, Cait E. MacPhee and Rosalind J. Allen, Biophysical Journal, 108, 3 , p. 632-643 (2015)
  18. Inherent Variability in the Kinetics of Autocatalytic Protein Self-Assembly DOI
    Juraj Szavits Nossan, Kym Eden, Ryan Morris, Cait E. MacPhee, Martin R. Evans and Rosalind J. Allen, Physical Review Letters, 113, 9 (2014)
  19. The role of mechanical forces in the planar-to-bulk transition in growing Escherichia coli microcolonies DOI
    Matthew A. A. Grant, Bartlomiej Waclaw, Rosalind J. Allen and Pietro Cicuta, Journal of the Royal Society Interface, 11, 97 (2014)
  20. Scalar phi(4) field theory for active-particle phase separation DOI
    Raphael Wittkowski, Adriano Tiribocchi, Joakim Stenhammar, Rosalind J. Allen, Davide Marenduzzo and Michael E. Cates, Nature Communications, 5 (2014)
  21. Osmosis with active solutes DOI
    Thomas W. Lion and Rosalind J. Allen, Europhysics Letters, 106, 3 (2014)
  22. Speed of Invasion of an Expanding Population by a Horizontally Transmitted Trait DOI
    Juan Venegas-Ortiz, Rosalind J. Allen and Martin R. Evans, Genetics, 196, 2 (2014)
  23. Community history affects the predictability of microbial ecosystem development DOI
    Eulyn Pagaling, Fiona Strathdee, Bryan M Spears, Michael E Cates, Rosalind J Allen and Andrew Free, The ISME Journal, 8, 1 , p. 19-30 (2014)
  24. Malliavin Weight Sampling DOI
    Patrick B. Warren and Rosalind J. Allen, Entropy, 16, 1 , p. 221-232 (2014)
  25. Phase behaviour of active Brownian particles DOI
    Joakim Stenhammar, Davide Marenduzzo, Rosalind J. Allen and Michael E. Cates, Soft Matter, 10, 10 , p. 1489-1499 (2014)
  26. Continuum Theory of Phase Separation Kinetics for Active Brownian Particles DOI
    Joakim Stenhammar, Adriano Tiribocchi, Rosalind J. Allen, Davide Marenduzzo and Michael E. Cates, Physical Review Letters, 111, 14 (2013)
  27. Mechanistic and environmental control of the prevalence and lifetime of amyloid oligomers DOI
    Ryan Morris, Kym Eden, Reuben Yarwood, Line Jourdain, Rosalind J Allen and Cait E Macphee, Nature Communications, 4 (2013)
  28. Automatic, optimized interface placement in forward flux sampling simulations DOI
    Kai Kratzer, Axel Arnold and Rosalind J. Allen, The Journal of Chemical Physics, 138, 16 (2013)
  29. Single-molecule imaging at high hydrostatic pressure DOI
    Hugh Vass, S. Lucas Black, Cristina Flors, Diarmuid Lloyd, F. Bruce Ward and Rosalind J. Allen, Applied Physics Letters, 102, 15 (2013)
  30. Parasites on parasites DOI
    Steven J. Court, Richard A. Blythe and Rosalind J. Allen, Europhysics Letters, 101, 5 (2013)
  31. Genes Required for Growth at High Hydrostatic Pressure in Escherichia coli K-12 Identified by Genome-Wide Screening DOI
    S Lucas Black, Angela Dawson, F Bruce Ward and Rosalind J Allen, PLoS One, 8, 9 (2013)
  32. Osmosis in a minimal model system DOI
    Thomas W. Lion and Rosalind J. Allen, The Journal of Chemical Physics, 137, 24 (2012)
  33. Malliavin Weight Sampling for Computing Sensitivity Coefficients in Brownian Dynamics Simulations DOI
    Patrick B. Warren and Rosalind J. Allen, Physical Review Letters, 109, 25 (2012)
  34. Mutational Pathway Determines Whether Drug Gradients Accelerate Evolution of Drug-Resistant Cells DOI
    Philip Greulich, Bartlomiej Waclaw and Rosalind J. Allen, Physical Review Letters, 109, 8 (2012)
  35. Computing the local pressure in molecular dynamics simulations DOI
    Thomas W. Lion and Rosalind J. Allen, Journal of Physics: Condensed Matter, 24, 28 (2012)
  36. Non-stationary forward flux sampling DOI
    Nils B. Becker, Rosalind J. Allen and Pieter Rein ten Wolde, The Journal of Chemical Physics, 136, 17 (2012)
  37. Steady-state parameter sensitivity in stochastic modeling via trajectory reweighting
    Rosalind Allen and Patrick Warren, The Journal of Chemical Physics, 136, 10 (2012)
  38. Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles DOI
    Philip Greulich, Luca Ciandrini, Rosalind J. Allen and M. Carmen Romano, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 85, 1 (2012)
  39. Oscillating microbial dynamics driven by small populations, limited nutrient supply and high death rates DOI
    Bhavin S Khatri, Andrew Free and Rosalind J Allen, Journal of Theoretical Biology, 314, p. 120-129 (2012)
  40. Effects of Macromolecular Crowding on Genetic Networks DOI
    Marco J. Morelli, Rosalind J. Allen and Pieter Rein ten Wolde, Biophysical Journal, 101, 12 , p. 2882-2891 (2011)
  41. Dynamical Phase Transition in a Model for Evolution with Migration DOI
    Bartlomiej Waclaw, Rosalind J. Allen and Martin R. Evans, Physical Review Letters, 105, 26 (2010)
  42. Non-equilibrium dynamics of an active colloidal "chucker" DOI
    C. Valeriani, Rosalind Allen and D. Marenduzzo, The Journal of Chemical Physics, 132, 20 (2010)
  43. A multipurpose modular system for high-resolution microscopy at high hydrostatic pressure DOI
    Hugh Vass, S. Lucas Black, Eva M. Herzig, F. Bruce Ward, Paul S. Clegg and Rosalind J. Allen, Review of Scientific Instruments, 81, 5 (2010)
  44. Switching and Growth for Microbial Populations in Catastrophic Responsive Environments DOI
    Paolo Visco, Rosalind J. Allen, Satya N. Majumdar and Martin R. Evans, Biophysical Journal, 98, 7 , p. 1099-1108 (2010)
  45. Forward flux sampling for rare event simulations DOI
    Rosalind J. Allen, Chantal Valeriani and Pieter Rein ten Wolde, Journal of Physics: Condensed Matter, 21, 46 (2009)
  46. DNA looping provides stability and robustness to the bacteriophage lambda switch DOI
    Marco J. Morelli, Pieter Rein ten Wolde and Rosalind J. Allen, Proceedings of the National Academy of Sciences, 106, 20 , p. 8101-8106 (2009)
  47. Statistical physics of a model binary genetic switch with linear feedback DOI
    Paolo Visco, Rosalind J. Allen and Martin R. Evans, Physical Review E - Statistical, Nonlinear and Soft Matter Physics, 79, 3 (2009)
  48. Homogeneous nucleation under shear in a two-dimensional Ising model: Cluster growth, coalescence, and breakup DOI
    Rosalind J. Allen, Chantal Valeriani, Sorin Tanase-Nicola, Pieter Rein ten Wolde and Daan Frenkel, The Journal of Chemical Physics, 129, 13 (2008)
  49. Exact solution of a model DNA-inversion genetic switch with orientational control DOI
    Paolo Visco, Rosalind J. Allen and Martin R. Evans, Physical Review Letters, 101, 11 (2008)
  50. Reaction coordinates for the flipping of genetic switches DOI
    Marco J. Morelli, Sorin Tanase-Nicola, Rosalind J. Allen and Pieter Rein ten Wolde, Biophysical Journal, 94, 9 , p. 3413-3423 (2008)
  51. Eliminating fast reactions in stochastic simulations of biochemical networks: A bistable genetic switch DOI
    Marco J. Morelli, Rosalind J. Allen, Sorin Tanase-Nicola and Pieter Rein ten Wolde, The Journal of Chemical Physics, 128, 4 (2008)
  52. Nucleation in a Sheared Ising Model: Effects of External Field
    Rosalind J. Allen, Chantal Valeriani and Sorin Tanase-Nicola, Progress of theoretical physics supplement, 175 , p. 144-153 (2008)